The Joe team is slimmed down to only 12 members and Duke leaves Flint in charge. An Army General named Phillip Rey is fighting with Mistress Armada and Major Bludd in Turkey. Lady Jaye, Stalker and Lifeline visit Cobra Commander who is being counseled by a Dr. Edmonds. Duke confronts the Jugglers and he is thrown in jail with Snake-Eyes. When they move the two of them they are rescued by Scarlett and Storm Shadow.
-Introduction of General Phillip Rey.
-Introduction and death of Tracker.
-Introduction of Dr. Edmonds.
-Storm Shadow returns to the Joes' side.